Webapps
Neurodesk offers a set of browser-native webapps for protocol comparison, QSM processing, medical image segmentation and many more tasks. They run directly in the browser, so there is no desktop installation step before you can start working.
CALMaR: Co-designed Automated Lesion Mapping and Reporting
Section titled “CALMaR: Co-designed Automated Lesion Mapping and Reporting”CALMaR performs brain extraction, lesion masking, MNI registration, atlas overlap, functional-connectivity mapping, and reportable tables for stroke lesions.
dicompare
Section titled “dicompare”dicompare is a browser-based tool for sharing, comparing, and validating DICOM acquisition protocols. It is useful when teams want to standardise scanner protocols across sites, compare local scans against agreed standards, and generate shareable schemas and compliance reports.
MuscleMap
Section titled “MuscleMap”MuscleMap performs browser-based muscle segmentation from MRI data. It is designed for whole-body and regional muscle analysis and provides an interactive viewer for reviewing segmentation outputs.
QSMbly
Section titled “QSMbly”QSMbly provides a full Quantitative Susceptibility Mapping workflow in the browser. It supports DICOM and NIfTI input data and exposes the main preparation, masking, SWI, and QSM pipeline steps through a guided interface.
SeedSeg
Section titled “SeedSeg”SeedSeg performs browser-based segmentation of intraprostatic gold fiducial markers in prostate MRI using a 3D U-Net model. It supports DICOM and NIfTI input data.
Spinal Cord Toolbox
Section titled “Spinal Cord Toolbox”This is a browser-based implementation of the Spinal Cord Toolbox MRI segmentation workflows.
VesselBoost
Section titled “VesselBoost”VesselBoost is a browser-based blood vessel segmentation tool. It combines preprocessing and inference steps in a guided workflow so users can segment vessel structures from MRI angiography data directly on their own machine.
Webapps from Neurodesk friends and family
Section titled “Webapps from Neurodesk friends and family”These browser-based webapps are built and maintained by collaborators in the wider Neurodesk community and are not maintained by us.